Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015954059.1_cds_XP_016493005.1_83156
CDS Infomation

[gene=LOC107812421] [db_xref=GeneID:107812421] [protein=ATP-dependent DNA helicase DDM1-like isoform X2] [protein_id=XP_016493005.1] [location=join(22033..22107,23158..23421,23517..23603,24000..24346,24487..24676,24826..25001,25564..25633,25716..25905,26381..26473,26558..26652,26743..26862,29675..29794,31150..31248,31328..31435,31795..32034)] [gbkey=CDS]
Sequence

ATGGTTGCTGACGCAGATAACGGAGTGAAGGACGTAACTAAAACGGATTCTCCTGTTTCC
GTCCTCGCAGATGAGGATACATGCAAAGAGGAGGTATCTGTCAAATTAGAGGATGAAGTA
TTTCTTGATGCAAAAAATGGGGATGTCTCTCTTTTATCTGAATCCATGGCAAAGGAAGAG
GAAAACTTGATGGAAGCACGTGTAAAGGAGGAAGAAGTAAATGAGCTAAAAGAGGCCCCC
AAATTGAATGACCTTCAATTTAGTAAGTTGGACGAGCTTCTTACACAGACCCAGCTTTAT
TCAGAGTTCCTGCTGGAGAAGATGGATAACATCACAGTGAATGGAGTGGAAGATGAAGAA
GAAAGTGGTAACGACAAGAAGAGGGGTCGTGGCACAAAAAGAAAGGCATCCACAAGTTAT
AATAATAAGAAGGCCAAGAGAGCTGTTGCTGCCATGCTTTCAAGATCTAAAGAAGGTGGT
TGTATTGAGGATTCAACCCTCACAGAGGAGGAGAGAGTTGAGAAGGAGCAGGCTGAACTT
GTGCCCTTGCTGACTGGTGGAAAGTTGAAGTCTTATCAACTGAAGGGTGTCAAGTGGTTG
ATTTCATTATGGCAAAATGGGTTGAATGGGATTCTAGCTGATCAGATGGGACTTGGAAAG
ACCATTCAAACTATTGCTTTTCTTGCACATTTAAAGGGAAATGGGTTAGATGGGCCTTAT
TTGGTCATCGCCCCCCTTTCAACTCTTTCAAATTGGGTGAATGAGATAGAAAGGTTTGTC
CCATCAATTAATACAATCATCTACCATGGAGACAAGAAACAAAGAGATGAGTTAAGGAGG
AAGCACATGCCGAGGACCATAGGTCCCAAATTTCCCATTGTAGTTACTTCTTATGAGATT
GCGATGAGTGATGCGAAGAAATACCTGAGGCATTATCATTGGAAGTATCTTGTGGTTGAT
GAGGGGCACAGGTTAAAGAACTCGAAGTGCAAACTGTTCAGGGAACTCAAGCTGCTGCCG
ATTGAAAACAAGCTTCTATTAACTGGAACACCTCTGCAGAACAACTTAGCTGAGTTGTGG
TCATTGTTAAATTTCATCTTACCAGATATATTTTCATCCTTAGAAGAATTTGAGTCATGG
TTTGACCTAGCTGGGAAGTGCGGCAATGAAGCCCAAAAGGAAGAAATGGAAGAGAAAAGG
AGGGCACAAGTTGTTACAAAACTCCATGCAATTTTACGTCCTTTTCTCCTTCGGAGATTG
AAAGTAGATGTTGAGCAAATGCTTCCCCGAAAGAAAGAGATAATTTTATATGCCACCATG
ACTGAGCACCAGAAAAAGTTCCAGGACCATCTAATTAACAGGACATTGGAGGGTTATTTG
CTTGAGAATGTGTCCCGCGGGCATGGTTTTAAAAAGCTCACTAATTTGATGATTCAACTT
CGCAAAAATTGCAATCATCCTGACCTCTTGGAGTCGGCATTTGACGGTTCTTTTTGTTAT
CCACCTGTAGAACAAATAGTTGGGCAATGTGGCAAGTTCCGCTTACTGGACAGGCTTTTG
TCAGAACTGTTTGCTCGCAAGCATAAAGTGCTGATATTCTCTCAGTGGACTAAAGTACTT
GACATAATGGATTACTATTTTAGTGAAAAGGGCTTTGATGTTTGTAGAATTGATGGCAGC
GTGAAATTGGATGAAAGAAAAAGACAGATCAAGGAGTTCAATGATGTTAACAGTGACTGC
AGGATATTTCTTCTGAGCACTAGAGCTGGTGGCCTTGGCATTAATCTTACTGCTGCAGAC
ACCTGCATTTTATATGACAGTGACTGGAATCCCCAAATGGATCTCCAGGCTATGGATCGG
TGTCATAGAATAGGTCAGACAAAACCTGTTCATGTTTATAGGCTTGCAACTGCTCTCTCG
GTGGAGGGTCGAATTCTCAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTAGTGATT
GGAAAAGGACAATTTAAGCAAGAAAGAAATAAGCCTACTACAGATATCGTGGAGGAAGAG
GACTTGTTGGCGCTTTTGAGAGATGAAGATAGCGAAGAGGACAAGTTGGTGCAGACAGAT
CTTAGTGATGAGGATCTACAGAGGGTTTTAGACCGAATTGATTTACTTGTTGGTCCTCCA
AGCGAAGATGTTAACCCTGAATCAAGTCTAAATGTCCTTCCTCTTAAAGGACCTGGCTGG
GAAGTTGTTATTCCAACTGCAACTGGAGGCATGCTTTCTACGCTCAACAGCTGA

Peptide Sequence

PEP ID

XP_016493005.1
PEP Infomation

PREDICTED: ATP-dependent DNA helicase DDM1-like isoform X2 [Nicotiana tabacum]
Sequence

MVADADNGVKDVTKTDSPVSVLADEDTCKEEVSVKLEDEVFLDAKNGDVSLLSESMAKEE
ENLMEARVKEEEVNELKEAPKLNDLQFSKLDELLTQTQLYSEFLLEKMDNITVNGVEDEE
ESGNDKKRGRGTKRKASTSYNNKKAKRAVAAMLSRSKEGGCIEDSTLTEEERVEKEQAEL
VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLDGPY
LVIAPLSTLSNWVNEIERFVPSINTIIYHGDKKQRDELRRKHMPRTIGPKFPIVVTSYEI
AMSDAKKYLRHYHWKYLVVDEGHRLKNSKCKLFRELKLLPIENKLLLTGTPLQNNLAELW
SLLNFILPDIFSSLEEFESWFDLAGKCGNEAQKEEMEEKRRAQVVTKLHAILRPFLLRRL
KVDVEQMLPRKKEIILYATMTEHQKKFQDHLINRTLEGYLLENVSRGHGFKKLTNLMIQL
RKNCNHPDLLESAFDGSFCYPPVEQIVGQCGKFRLLDRLLSELFARKHKVLIFSQWTKVL
DIMDYYFSEKGFDVCRIDGSVKLDERKRQIKEFNDVNSDCRIFLLSTRAGGLGINLTAAD
TCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATALSVEGRILKRAFSKLKLEHVVI
GKGQFKQERNKPTTDIVEEEDLLALLRDEDSEEDKLVQTDLSDEDLQRVLDRIDLLVGPP
SEDVNPESSLNVLPLKGPGWEVVIPTATGGMLSTLNS

Transcript Sequence

Gene sequence data has not been registered.